[Coral-List] microRNAs in Symbiodinium microadriaticum
Christian R Voolstra
christian.voolstra at kaust.edu.sa
Sat Oct 12 08:32:23 EDT 2013
Hi friends and colleagues,
if you are interested in miRNAs please have a look at our recent publication in BMC Genomics 'Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals', which can be freely accessed here: http://www.biomedcentral.com/1471-2164/14/704/abstract
We identified a set of 21 novel smRNAs that share stringent key features with functional microRNAs from other model organisms. smRNAs were predicted independently over all 9 treatments and their putative gene targets were identified. In addition, we assembled a transcriptome of 58,649 genes and determined differentially expressed genes (DEGs) between treatments. Heat stress was found to produce a much larger number of DEGs than other treatments that yielded only few DEGs. Analysis of DEGs also revealed that minicircle-encoded photosynthesis proteins seem to be common targets of transcriptional regulation. Furthermore, we identified the core RNAi protein machinery in Symbiodinium.
Thank you,
Chris
Christian R Voolstra
Assistant Professor of Marine Science
Red Sea Research Center
KAUST university
--
------------------------------
This message and its contents, including attachments are intended solely
for the original recipient. If you are not the intended recipient or have
received this message in error, please notify me immediately and delete
this message from your computer system. Any unauthorized use or
distribution is prohibited. Please consider the environment before printing
this email.
More information about the Coral-List
mailing list