[Coral-List] Image-analysis software for counting

Sylvain ago.sylvain at gmail.com
Fri Jun 12 10:21:00 EDT 2015

Hi Becca,

Try ImageJ (http://imagej.nih.gov/ij/), it has a counter where you can
define different categories, place the point on your photo, and
calculate the total per categories and total points.  It is free, run on
all platform (GNU/Linux, Mac, and windows) and widely used.
If it is not enough there is a plugin objectj
(https://sils.fnwi.uva.nl/bcb/objectj/2-Tutorial.html) that has a more
powerful counter.


On 6/12/2015 1:00 AM, coral-list-request at coral.aoml.noaa.gov wrote:
> Date: Wed, 10 Jun 2015 15:14:59 -0500
> From: Becca Maher <rlm6 at rice.edu>
> Subject: [Coral-List] Image-analysis software for counting
> To: coral-list at coral.aoml.noaa.gov
> Message-ID:
> 	<CAHn9id2Y551P7f8f5jECJWbDGgK2a=+iWDebKU22QAN2fHxg-A at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
> Dear Coral list,
> I am analysing images of long term monitoring quadrat photos for evidence
> of barnacles on a species of *Orbicella.* Any suggestions for
> image-analysis software that allows me to place a point on each of the bore
> holes (more than 100 on some colonies) and count the total points?
> Thanks!
> Becca Maher
> Ecology and Evolutionary Biology
> Rice University '16

*Sylvain Agostini, Dr. Sci.*
/Shimoda Marine Research Center/
/Tsukuba University/
Addr: Shimoda 5-10-1, Shizuoka, Japan
mail: agostini.sylvain at shimoda.tsukuba.ac.jp
tel: +81-(0)558-22-6697

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