[Coral-List] MEGA2018: Ecological genomics workshops in FL Keys, June 2018
Mikhail Matz
matz at utexas.edu
Thu Apr 12 13:23:55 EDT 2018
Dear colleagues -
We have a few seats left in our genomics workshops "for the uninitiated", Methods in Ecological Genomics Analysis (MEGA 2018). There are two of them, as usual - please see short descriptions below. More details (including contacts, costs, and how to register) can be found on the workshop's website: https://ecogeno.weebly.com/ <https://ecogeno.weebly.com/> - please spread the word!
(and yes, we will be working with corals as our subjects!)
Misha Matz
MEGA2018 organizer and instructor-in-chief
https://ecogeno.weebly.com <https://ecogeno.weebly.com/>
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1. June 3-9, 2018: Population genomics using low-coverage / RAD data (ANGSD-based)
Wet lab: preparation of 2bRAD libraries.
Dry lab:
- read processing using HPC computer cluster (Linux/bash);
- population structure (PCA, ADMIXTURE, EEMS)
- demographic analysis based on allele frequency spectrum (Moments, stairwayPlot)
- genome scanning
Throughout the workshop we will use probabilistic genotyping with ANGSD, which is designed for low-coverage data.
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2. June 10-16, 2018: Functional genomics and gene expression network analysis with TagSeq.
Wet lab: preparation of TagSeq libraries
Dry lab:
- read processing using HPC computer cluster (Linux/bash);
- analysis of broad-scale patterns (PCA, DAPC)
- finding differentially expressed genes using generalized linear models (DESeq2)
- functional summaries (GO_MWU, KOGMWU)
- gene co-expression network analysis (WGCNA)
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Mikhail V. Matz
Associate Professor
University of Texas at Austin
Department of Integrative Biology
2415 Speedway (Patterson labs) C0990 Austin, Texas 78712
phone 512-992-8086 cell, 512-475-6424 lab
fax 512-471-3878
web matzlab.weebly.com <http://matzlab.weebly.com/>
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