[Coral-List] Don't be such a scientist. Coal vs Reefs

Dean Jacobson atolldino at yahoo.com
Sat Jan 14 21:38:51 EST 2012

Amen, Tom

Funny you should mention it, about that west end of Majuro.... does anyone have models of near shore water circulation along steep, atoll shores?  I am finding regular and sometimes persistent fronts between warm turbid surface water and cool clear water, with changes in current direction and speed at the boundaries; obviously eddies, perhaps thrown out by "corners" along the reef front, are at work.  Also, I am finding variation in the incidence of disease on massive colonies (the most common being Hydnophora and Platygira) that correlate with this patchy turbidity, and said turbidity seems to correlate with patchy habitation (clusters of homes that may be introducing septic leakage onto the nearby reef).  Immediately adjacent to a region of grotesque disease morality (a reef that was lovely back in 2004) I find a population of pristine, unblemished colonies! This has forced me to conclude that disease incidence is quite granular, I have to document
 every meter of reef, photographing thousands of colonies, to properly describe the distribution of disease, (which I have begun to do).  I also need to sample for E. coli, a proxy for septic input, every 100 meters or so..  Any comments?

By the way, I noticed this week that PII has begun to prepare to mine the lagoon reef by our water reservoirs, by beginning to construct a revetment/ramp across the reef flat.  I guess FAA has said no to EPA, they will not delay the airport RSA project in order to reconsider mitigation.  I told our local EPA that their is plenty of branching coral that could easily be relocated.  The EPA board of directors refused to look at my underwater photos, and did the Ports Authority did no EIA and held no public hearing for this new coral mining project. Back to the bad old days, funded, once again, by US money.  I have never received replies to my recent emails to FAA and EPA, by the way.  Perhaps someone who is more "in the loop" could weigh in.

Dean Jacobson

 From: Tom Williams <ctwiliams at yahoo.com>
To: Quenton Dokken <qdokken at gulfmex.org>; 'Michael Risk' <riskmj at mcmaster.ca>; 'Bill Allison' <allison.billiam at gmail.com> 
Cc: 'coral-list coral-list' <coral-list at coral.aoml.noaa.gov>; 'Eugene Shinn' <eshinn at marine.usf.edu> 
Sent: Friday, January 13, 2012 12:21 PM
Subject: Re: [Coral-List] Don't be such a scientist. Coal vs Reefs
Yeah and how about mentioning Reef or Corals at least ONCE in any messages....I get tired of GW, CC, GHG, Acid..., Shale-Gas, coal-bed gases, energy efficiencies/LEEDs and not one mention of Reef or Coral and what they think about these discussions...  A lot of other blogs are available for non-coral stuff 

Can we get back to CORALS ??? 
How about those off the coast of Sabah (Borneo/EastMalaysia) and how dynamite fishing was causing destruction (short-term) while agricultural runoff was sliminghuge areas near Tawau, Sandakan, and Kota Kinabulu...
How about those still left on the west end of Majuro (Marshall Islands)....etc.
List needs refocus...

From: Quenton Dokken <qdokken at gulfmex.org>
To: 'Michael Risk' <riskmj at mcmaster.ca>; 'Bill Allison' <allison.billiam at gmail.com> 
Cc: 'coral-list coral-list' <coral-list at coral.aoml.noaa.gov>; 'Eugene Shinn' <eshinn at marine.usf.edu> 
Sent: Friday, January 13, 2012 9:02 AM
Subject: Re: [Coral-List] Don't be such a scientist..

Good Day All,

I am convinced that global change is real and human produced greenhouse
gases are a primary effector.    I also believe discussions fall short in
finger pointing.  On this list-serve, when we discuss global warming and
greenhouse gases why do we not ever hear mention of the coal fired utility
industry which is certainly a major contributor.  What about the commercial
transportation industry, marine shipping industry - what about tourism and
agriculture.  How about the military contribution to all of this?  These
industries all depend upon energy in one form or another.  To quote M.
Risk, "cui bono?"  And, every one of these businesses and industries invest
millions in lobbyist and lobbying efforts to protect their "bono."  The fact
is we all have a lot to gain and loose in this environmental issue, both in
the near term and long-term.


Quenton R. Dokken, PhD
Gulf of Mexico Foundation, Inc.

PMB 51  5403 Everhart Rd.
Corpus Christi, TX 78411

3833 South Staples
Suite S-214
Corpus Christi, TX 78411

361-882-3939 office
361-882-1260 fax
361-442-6064 cell
1-800-884-4175 toll free

qdokken at gulfmex.org

-----Original Message-----
From: coral-list-bounces at coral.aoml.noaa.gov
[mailto:coral-list-bounces at coral.aoml.noaa.gov] On Behalf Of Michael Risk
Sent: Friday, January 13, 2012 10:16 AM
To: Bill Allison
Cc: coral-list coral-list; Eugene Shinn
Subject: Re: [Coral-List] Don't be such a scientist.

Hi Bill.

Too much time poolside makes work for idle hands, I see.

Hockey is Canada's national pastime, so I cannot let your commie/fascist
posting go unanswered! (And I am miffed-you seem to get a higher volume of
vitriol in your off-line communications than I do. I need to up my game!
Perhaps this will do it.)

My father was a lawyer, and taught me many valuable things. He said that,
faced with complex problems, the first question to ask was: "cui bono?" Who
stands to gain?

There is a lot of talk, suggesting that the concern about climate change is
being driven by scientists who want grant money to increase their incomes.
This is even an election plank of some moron from Texas who is running for

Summary: Canadian scientists cannot take ANY grant funds as income. Neither
can researchers in the EU. In the US, wherefrom emanates most of this
garbage, researchers on 10-month contracts can take 2 months' income. (Of
course, money can be used to pay post-docs and the like. Now, there's a
route to the easy money! Get a post-doc!)

So anyone saying that scientists' greed drives this debate is not fully in
control of the facts. Or ignores them.

Now, the hockey stick.

Most of you will know at least some of this history. In 1998, Mann et al
published a paper showing general decline of global average temperature from
the Medieval Warm down to the Little Ice Age (the "handle" of the stick),
followed by a sharp uptick (the "blade.") Steven McIntyre, a Canadian
retired mining executive, found some errors in how Mann et al. had processed
the data, and eventually got a rebuttal published in GRL (Geophs Res Let).
This prompted, among other responses, the US Senator who is the largest
single recipient of money from the oil and gas industry (James Imhof) to
state on the floor of the Senate that "man-made global warming is the
greatest hoax ever perpetrated on the American people". Cui bono.

McIntyre's opinions were picked up and widely circulated by various organs
that are supported by the oil industry. Cui bono.

These same organs have been conspicuously silent regarding the more than one
dozen papers published since Mann et al. 1998 that basically verify the
original hockey stick. "You could outfit an entire hockey team and still
have sticks left over." (Hoggan, 2009: "Climate Cover-up.")

In short: the hockey stick is alive and well, unless held by a member of the
Toronto Maple Leafs. There never was any coverup. A dedicated nit-picker
found some nits 15 years ago-the rest is obfuscation. Cui bono.

If you look long enough and hard enough at the material that denies
human-induced climate change, you will find big oily fingerprints all over

My father also taught me ethics.


On 2012-01-13, at 10:14 AM, Bill Allison wrote:

> Hello again Gene,
> Thanks for bringing that issue of Science to my attention. You might 
> also be interested in the article on fraud in Nature Dec. 01 cited 
> below.
> You are right about the "juices flowing" if the messages that I, like 
> Steve received off-list are any indication. Being labeled a nazi was 
> probably the low point compared to which the commie insinuation was 
> akin to flattery.
> With respect to your point about who is or is not qualified to judge 
> the validity of climate science, I think anyone with a modicum of 
> critical reading skill can dissect the like of Ridley's tract rather 
> easily as I think my essay on the topic demonstrated. Beyond that its 
> a matter of reading the peer-reviewed climate science publications and 
> comparing them to those written by climate-change deniers. Easy.
> Your selections from Science Dec. 2, 2011 are very interesting 
> especially if one goes beyond the passages you selected. I'll consider 
> only the first because the second seems to be mostly about about using 
> a new medium to study already well studied phenomena, social norms and 
> possibly groupthink.
> Crocker seems to rate replication as the first major bulwark against 
> fraud and explains why she thinks that fails in social psychology. The 
> failure of peer-review seems to be a secondary cause and this she 
> attributes to precisely the factor you seem to find astonishing, the 
> fact that 25 different editors were involved, at various journals, 
> reviewing 40 papers. She states, "Under such circumstances, it would 
> be almost impossible to detect a pattern of data fabrication." It was 
> not as though the 25 all read the same paper or sat down in a room and 
> discussed the papers. Wicherts 2011 thinks that lack of transparency 
> was important and that "...the closed culture that characterizes much 
> psychology research greatly aided Stapel's deceptions."
> These are intriguing conclusions and as it happens the same issue of 
> Science has a "Special Section on Data Replication and 
> Reproducibility" entailing these topics. Not only that, but one of the 
> articles in that section is about climate science that is described as 
> follows in the introduction to the special section: "The need to 
> convince the public that data are replicable has grown as science and 
> public policy-making intersect, an issue that has has beset climate 
> change studies. As Santer et al. (p. 1232) describe, having multiple 
> groups examining the same data and generating new data has led to 
> robust conclusions."
> (Jasny, 2011). The study does just what is prescribed to avoid fraud 
> in social psychology. Fascinating wouldn't you say?
> Here is the abstract from Santer et al: "Although concerns have been 
> expressed about the reliability of surface temperature data sets, 
> findings of pronounced surface warming over the past 60 years have 
> been independently reproduced by multiple groups. In contrast, an 
> initial finding that the lower troposphere cooled since 1979 could not 
> be reproduced. Attempts to confirm this apparent cooling trend led to 
> the discovery of errors in the initial analyses of satellite-based 
> tropospheric temperature measurements."
> Also in that issue is study concluding that "...environmental change 
> is expected to generate eco-evolutionary change..." and that changes 
> in the average environment will have a greater effect than changes in 
> environmental variability. That reminds me of something I read 
> recently about signal:noise ratio. Although that study is about wolves 
> it is arguably no more tangential to climate/coral reef science where 
> transparency is high than is fraud in social pyschology with its 
> culture of secrecy.
> References:
> Coulson, T., D. R. MacNulty, et al. (2011). "Modeling Effects of 
> Environmental Change on Wolf Population Dynamics, Trait Evolution, and 
> Life History." Science 334(6060): 1275-1278.
> http://www.sciencemag.org/content/334/6060/1275.abstract
> Crocker, J. and M. L. Cooper (2011). "Addressing Scientific Fraud."
> Science 334(6060): 1182.
> http://www.sciencemag.org/content/334/6060/1182.short
> Jasny, B., G. Chin, et al. (2011). "Again, and Again, and Again . 
> (Introduction to special section on data replication and 
> reproducibility).." Science 334(6060): 1225.
> http://www.sciencemag.org/content/334/6060/1232.abstract
> Santer, B. D., T. M. L.. Wigley, et al. (2011). "The Reproducibility of 
> Observational Estimates of Surface and Atmospheric Temperature 
> Change." Science 334(6060): 1232-1233.
> http://www.sciencemag.org/content/334/6060/1232.abstract
> Wicherts, J. M. (2011). "Psychology must learn a lesson from fraud 
> case." Nature 480(7375): 6. http://dx.doi.org/10.1038/480007a
> Btw, I am not sure what you meant to imply with your allusion to the 
> hockey stick. Care to make that explicit?
> Cheers,
> Bill
> On Thu, Jan 12, 2012 at 10:40 PM, Eugene Shinn <eshinn at marine.usf.edu>
>> All that "Don't be too much of a scientist" rhetoric really got 
>> peoples juices flowing. I do not recall saying I did not believe in 
>> climate change but I do question whether CO2 is the main driver or 
>> just along for the ride..  There does appear to have been a slow down 
>> in temperature rise (lots of ups and down but basically flat) during 
>> the past decade while CO2 continued to rise. The high world wide 
>> temperature in 1998 has not been repeated so it tends to skew the 
>> curve.  The next 10 years should be very telling.
>>    Question? How many coral-listers are climate change researchers?
>> Very few I suspect yet many seem to accept Al Gores statement that, 
>> "the science is settled." I am certainly not conversant with the 
>> inner working of the climate science community either but as a 
>> geologist I do respect the past and the information stored in the 
>> rocks.  Climate has been changing since the beginning of time. Since 
>> I, and I suspect most, coral-listers, are not certified climate 
>> scientists we are all pretty much free to believe, or not believe, 
>> what climate scientists say.  Why do I say that?
>>      The Dec 2, 2011 issue of SCIENCE on page 1182 has a striking 
>> Editorial titled "Addressing Scientific Fraud." The editorial points 
>> out that "social psychologist Diederik Stapel fabricated data for 
>> numerous studies conducted over a period of 15-20 years."  "Over 100 
>> publications are now under investigation."  Apparently this scientist 
>> was a giant in his field.  His publications have been referenced by 
>> numerous other scientists, thus compounding the damage his fraud has 
>> created. Further, the article points out that peer review (we like to 
>> call it the gold standard in science) did not, and is not designed 
>> to, catch such fraud.  His works passed through 25 different journal 
>> editors! The editorial also points out how "difficult it is for 
>> authorities to respond appropriately, because students, colleagues, 
>> and universities have so much to lose when fraud is alleged." That 
>> would be true for governmental agencies as well.  Now I am not 
>> suggesting that any of our esteemed climate scientists have committed 
>> fraud but many have made such accusations.  The famous "hockey stick 
>> "curve is a good example.
>>      There is much more in the editorial and I suggest listers 
>> should read it. In the end it was some brave students (call them 
>> skeptics or deniers) who finally brought the fraud to the attention 
>> of authorities. Now I am not a social scientist conversant in their 
>> jargon and interworking's and certainly would not have detected the 
>> fraud either. Admittedly my knowledge of the interworking of climate 
>> scientists is not much better but I do know they appear to be well 
>> funded and a lot is at stake if they are wrong. I suspect that most 
>> coral reef researchers are in pretty much the same boat. I conclude 
>> it is reckless to willingly accept pronouncements from a field of 
>> science about which most of us know so little, especially when it is 
>> based so heavily on computer models using suspect data and a 
>> questionable mind-set so vividly revealed by the Climategate affair.
>> Yes I know universities authorities investigated and gave these folks 
>> a clean bill of health.  What else could they do? Think about the 
>> social science case mentioned earlier.
>>      Many like to make comparisons with the tobacco industry case or 
>> point out that industry money may be funding some "skeptics and 
>> deniers." Is oil company money any different than government money?
>> It seems both groups have a lot at stake.
>>      In conclusion, On page 1220 of the same SCIENCE issue is another 
>> sociology article titled "Experimenting with Buddies" which relates 
>> how groups of people using social media were experimentally 
>> manipulated. Could that happen on the coral list? Umm---we may never 
>> know when and how we are being manipulated. Who ever started the 
>> "don't be too much of a scientist" stuff probably had it right.
>> Scientists can be as wrong and biased as anyone else. Gene
>> --
>> No Rocks, No Water, No Ecosystem (EAS)
>> ------------------------------------ 
>> -----------------------------------
>> E. A.. Shinn, Courtesy Professor
>> University of South Florida
>> College of Marine Science Room 221A
>> 140 Seventh Avenue South
>> St. Petersburg, FL 33701
>> <eshinn at marine.usf.edu>
>> Tel 727 553-1158----------------------------------
>> -----------------------------------
>> _______________________________________________
>> Coral-List mailing list
>> Coral-List at coral.aoml.noaa.gov
>> http://coral.aoml.noaa.gov/mailman/listinfo/coral-list
> --
> ________________________________
> Is this how science illuminates "reality"? - "the meaning of an 
> episode was not inside like a kernel but outside, enveloping the talk 
> which brought it out only as a glow brings out a haze."
> - narrator's comment about Marlow's tale-telling, in Heart of Darkness 
> (Conrad) _______________________________________________
> Coral-List mailing list
> Coral-List at coral.aoml.noaa.gov
> http://coral.aoml.noaa.gov/mailman/listinfo/coral-list

Michael Risk
riskmj at mcmaster.ca

Coral-List mailing list
Coral-List at coral.aoml.noaa.gov

Coral-List mailing list
Coral-List at coral.aoml.noaa.gov
Coral-List mailing list
Coral-List at coral.aoml.noaa.gov

More information about the Coral-List mailing list